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    LOC4342079 protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342079, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4342079
    Gene description
    protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic
    Locus tag
    OSNPB_060717100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0541C02.8
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    Genomic context

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    See LOC4342079 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (31334349..31337431, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30464973..30468097, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene basic leucine zipper 19 Neighboring gene uncharacterized LOC136356915 Neighboring gene leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 Neighboring gene uncharacterized LOC9267113 Neighboring gene RNA pseudouridine synthase 2, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic
    Names
    Os06g0717100
    P0481E08.41
    putative ERD7 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001421924.1 → NP_001408853.1  protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK071437, CI600173, CI689125
      UniProtKB/TrEMBL
      A0A0P0X0X3, Q5Z9N6, Q8SB36

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      31334349..31337431 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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