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    LOC4325254 transcription factor GTE3, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325254, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325254
    Gene description
    transcription factor GTE3, chloroplastic
    Locus tag
    OSNPB_010214300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0515G01.6
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    Genomic context

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    See LOC4325254 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6256849..6263140)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6247169..6253397)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene transcription factor PCF5-like Neighboring gene GDSL esterase/lipase At5g45920 Neighboring gene uncharacterized LOC9269554 Neighboring gene signaling peptide TAXIMIN 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor GTE3, chloroplastic
    Names
    OSJNBa0038J17.28
    Os01g0214300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6256849..6263140
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792616.3 → XP_015648102.1  transcription factor GTE3, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9EU24
      Conserved Domains (2) summary
      cd05506
      Location:142 → 240
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:312 → 375
      BET; Bromodomain extra-terminal - transcription regulation

    2. XM_015792607.3 → XP_015648093.1  transcription factor GTE3, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9EU24
      Conserved Domains (2) summary
      cd05506
      Location:142 → 240
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...
      pfam17035
      Location:312 → 375
      BET; Bromodomain extra-terminal - transcription regulation
    Nucleotide Protein
    Heading Accession and Version

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