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    LOC4342170 BTB/POZ and MATH domain-containing protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342170, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342170
    Gene description
    BTB/POZ and MATH domain-containing protein 3
    Locus tag
    OSNPB_070101400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 20.9), leaves after flowering (RPKM 20.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (89633..93083, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (82412..85929, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At1g74580 Neighboring gene transcription factor EMB1444 Neighboring gene very-long-chain aldehyde decarbonylase GL1-8 Neighboring gene zinc finger protein 10

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ and MATH domain-containing protein 3
    Names
    B1026C12.20
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain MBTB12
    Os07g0101400
    putative speckle-type POZ protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      89633..93083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791105.3 → XP_015646591.1  BTB/POZ and MATH domain-containing protein 3

      UniProtKB/TrEMBL
      B9FV33, Q0D982, Q69L94
      Conserved Domains (3) summary
      cd00121
      Location:17 → 150
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:172 → 292
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cd14736
      Location:292 → 355
      BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family
    Nucleotide Protein
    Heading Accession and Version

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