U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4325048 polypyrimidine tract-binding protein homolog 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325048, updated on 16-Jul-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4325048
    Gene description
    polypyrimidine tract-binding protein homolog 3
    Locus tag
    OSNPB_010867800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0677H08.8
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 46.3), roots after flowering (RPKM 35.4) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4325048 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38208253..38212558)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37580457..37584839)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene sterol 3-beta-glucosyltransferase UGT80B1 Neighboring gene protein YIP4b Neighboring gene protein LIKE COV 2 Neighboring gene ethylene-responsive transcription factor ABR1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    polypyrimidine tract-binding protein homolog 3
    Names
    Os01g0867800
    polypirimidine tract binding protein-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38208253..38212558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758117.3 → XP_015613603.1  polypyrimidine tract-binding protein homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VAZ5, Q0JHE8
      Conserved Domains (2) summary
      TIGR01649
      Location:4 → 460
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      cl17169
      Location:99 → 186
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015758112.3 → XP_015613598.1  polypyrimidine tract-binding protein homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VAZ5, Q0JHE8
      Conserved Domains (2) summary
      TIGR01649
      Location:4 → 460
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
      cl17169
      Location:99 → 186
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. XM_015758123.3 → XP_015613609.1  polypyrimidine tract-binding protein homolog 3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VAZ5, B8A6Y2, Q0JHE8
      Conserved Domains (1) summary
      TIGR01649
      Location:4 → 438
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials