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    LOC4345108 disease resistance protein RPM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345108, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345108
    Gene description
    disease resistance protein RPM1
    Locus tag
    OSNPB_080261000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 1.5), flowers (RPKM 1.0) and 5 other tissues See more
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    Genomic context

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    See LOC4345108 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (9824563..9830748)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RPM1-like Neighboring gene uncharacterized LOC107282052 Neighboring gene uncharacterized LOC4345109 Neighboring gene uncharacterized LOC107281846

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPM1
    Names
    B1063H10.19
    Os08g0261000
    putative RPR1h

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      9824563..9830748
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795453.2 → XP_015650939.1  disease resistance protein RPM1 isoform X2

      UniProtKB/TrEMBL
      B8B8Y3, B9FZY2
      Conserved Domains (5) summary
      COG4886
      Location:589 → 720
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:44 → 139
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:589 → 611
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:204 → 468
      NB-ARC; NB-ARC domain
      pfam12799
      Location:611 → 650
      LRR_4; Leucine Rich repeats (2 copies)

    2. XM_015795451.2 → XP_015650937.1  disease resistance protein RPM1 isoform X1

      UniProtKB/TrEMBL
      B8B8Y3, Q0J6V9, Q6Z5Z6
      Conserved Domains (4) summary
      COG4886
      Location:634 → 765
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:89 → 184
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:249 → 513
      NB-ARC; NB-ARC domain

    3. XM_026027650.1 → XP_025883435.1  disease resistance protein RPM1 isoform X1

      UniProtKB/TrEMBL
      B8B8Y3, Q0J6V9, Q6Z5Z6
      Conserved Domains (4) summary
      COG4886
      Location:634 → 765
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:89 → 184
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:634 → 656
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:249 → 513
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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