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    LOC4330491 ATP-dependent DNA helicase homolog RECG, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330491, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330491
    Gene description
    ATP-dependent DNA helicase homolog RECG, chloroplastic
    Locus tag
    OSNPB_020710800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1038_A06.18; OJ1311_H06.28
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 11.6), flower buds (RPKM 8.4) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29933220..29942949)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29441680..29451472)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 44 Neighboring gene uncharacterized GPI-anchored protein At4g28100 Neighboring gene heat shock 70 kDa protein 17 Neighboring gene uncharacterized LOC4330493

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent DNA helicase homolog RECG, chloroplastic
    Names
    ATP-dependent DNA helicase RECG-like
    Os02g0710800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29933220..29942949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772121.3 → XP_015627607.1  ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B9F2B7
      Conserved Domains (1) summary
      TIGR00643
      Location:249 → 952
      recG; ATP-dependent DNA helicase RecG

    2. XM_015772122.3 → XP_015627608.1  ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B9F2B7
      Conserved Domains (3) summary
      cd00046
      Location:471 → 635
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:662 → 804
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      TIGR00643
      Location:167 → 870
      recG; ATP-dependent DNA helicase RecG
    Nucleotide Protein
    Heading Accession and Version

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