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    LOC4342097 protein FREE1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342097, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342097
    Gene description
    protein FREE1
    Locus tag
    OSNPB_060724100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 21.7), flowers (RPKM 21.6) and 6 other tissues See more
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    Genomic context

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    See LOC4342097 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (30762467..30768158)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277207 Neighboring gene ABSCISIC ACID-INSENSITIVE 5-like protein 2 Neighboring gene uncharacterized LOC112936020 Neighboring gene uncharacterized LOC4342099

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intralumenal vesicle formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multivesicular body assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FREE1
    Names
    Os06g0724100
    Os06g0724200
    P0535F09.32
    P0535F09.33
    zinc finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      30762467..30768158
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787614.2 → XP_015643100.1  protein FREE1

      UniProtKB/TrEMBL
      A0A0P0X1F2, A0A8J8XD15, B9FQY3, Q0D9F0, Q5YLY5
      Conserved Domains (3) summary
      smart00064
      Location:334 → 400
      FYVE; Protein present in Fab1, YOTB, Vac1, and EEA1
      cd00934
      Location:178 → 253
      PTB; Phosphotyrosine-binding (PTB) PH-like fold
      pfam06273
      Location:88 → 223
      eIF-4B; Plant specific eukaryotic initiation factor 4B
    Nucleotide Protein
    Heading Accession and Version

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