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    LOC4344321 thioredoxin-like 1-1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344321, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344321
    Gene description
    thioredoxin-like 1-1, chloroplastic
    Locus tag
    OSNPB_070684100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_25618
    Expression
    Broad expression in flowers (RPKM 55.2), roots after flowering (RPKM 53.1) and 5 other tissues See more
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    Genomic context

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    See LOC4344321 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29245358..29247077, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29011632..29013265, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene ricin B-like lectin R40C1 Neighboring gene ricin B-like lectin R40G3 Neighboring gene uncharacterized LOC9266496 Neighboring gene leucine-rich repeat extensin-like protein 5 Neighboring gene uncharacterized LOC9267143

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell redox homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    thioredoxin-like 1-1, chloroplastic
    Names
    LOC_Os07g48510
    Lilium-type thioredoxin 1-1
    OSJNBa0060O17.16
    putative thioredoxin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403272.1 → NP_001390201.1  thioredoxin-like 1-1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      CB657798, CF335547, CI217077, CI292655
      UniProtKB/Swiss-Prot
      A0A0P0XAG7, Q6Z4N3
      UniProtKB/TrEMBL
      A2YQ16

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29245358..29247077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z4N3.1 GenPept UniProtKB/Swiss-Prot:Q6Z4N3

    Gene LinkOut

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