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    LOC4330556 ubiquitin-conjugating enzyme E2 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330556, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330556
    Gene description
    ubiquitin-conjugating enzyme E2 11
    Locus tag
    OSNPB_020721100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_D06.26
    Expression
    Biased expression in milk grains (RPKM 5.2), roots before flowering (RPKM 1.1) and 2 other tissues See more
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    Genomic context

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    See LOC4330556 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30410922..30412138, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29919119..29920493, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene chloride channel protein CLC-f Neighboring gene aspartyl protease family protein At5g10770 Neighboring gene ubiquitin-conjugating enzyme E2 11-like Neighboring gene uncharacterized LOC112937897

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 11
    Names
    Os02g0721100
    P0654B04.11
    putative ubiquitin conjugating enzyme 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30410922..30412138 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769325.3 → XP_015624811.1  ubiquitin-conjugating enzyme E2 11

      UniProtKB/TrEMBL
      A2X916, Q0DY16, Q6Z668
      Conserved Domains (1) summary
      smart00212
      Location:36 → 167
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic domain homologues
    Nucleotide Protein
    Heading Accession and Version

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