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    LOC9270637 ferredoxin, root R-B1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270637, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270637
    Gene description
    ferredoxin, root R-B1
    Locus tag
    OSNPB_010860601
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9270637 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37868127..37869059)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37241083..37242188)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein uL1-like Neighboring gene acidic endochitinase Neighboring gene hevamine-A Neighboring gene uncharacterized LOC107277998 Neighboring gene glucan endo-1,3-beta-glucosidase 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ferredoxin, root R-B1
    Names
    Os01g0860601
    P0489B03.32
    P0679C12.22
    putative ferredoxin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37868127..37869059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763174.3 → XP_015618660.1  ferredoxin, root R-B1

      UniProtKB/TrEMBL
      A0A0P0VAT6, A2WX74, A2ZZS7, C7IX61, Q5N7C3
      Conserved Domains (1) summary
      TIGR02008
      Location:69 → 164
      fdx_plant; ferredoxin [2Fe-2S]
    Nucleotide Protein
    Heading Accession and Version

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