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    LOC4330469 monodehydroascorbate reductase (NADH) [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330469, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330469
    Gene description
    monodehydroascorbate reductase (NADH)
    Locus tag
    OSNPB_020707100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MDAR2; MDHAR2; OsMDAR2; OsMDHAR2; 49D11.20a; OsJ_35954
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    Genomic context

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    See LOC4330469 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29721491..29725722, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29229964..29234195, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative aminoacrylate hydrolase RutD Neighboring gene monodehydroascorbate reductase (NADH) Neighboring gene dof zinc finger protein DOF3.1 Neighboring gene uncharacterized LOC136355287

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on NAD(P)H IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    monodehydroascorbate reductase (NADH) 2, peroxisomal
    Names
    LOC_Os02g47800
    Monodehydroascorbate reductase 2, peroxisomal
    OSJNBb0060O16.13
    P0680A05.39
    monodehydroascorbate reductase 2, peroxisomal-like
    monodehydroascorbate reductase 4, peroxisomal
    putative cytosolic monodehydroascorbate reductase
    NP_001403773.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416844.1 → NP_001403773.1  monodehydroascorbate reductase (NADH) 2, peroxisomal

      Status: VALIDATED

      Source sequence(s)
      AK065585, CB643199
      UniProtKB/Swiss-Prot
      Q8S3R2
      UniProtKB/TrEMBL
      A2X8R9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29721491..29725722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S3R2.1 GenPept UniProtKB/Swiss-Prot:Q8S3R2

    Gene LinkOut

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    Research Materials