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    LOC4345272 cation-chloride cotransporter 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345272, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4345272
    Gene description
    cation-chloride cotransporter 1-like
    Locus tag
    OSNPB_080323700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CCC1; KCC1; OsCCC1; OsJ_26882
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    Genomic context

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    See LOC4345272 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14253634..14262885, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14186143..14195420, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107282024 Neighboring gene ribonuclease E/G-like protein, chloroplastic Neighboring gene NDR1/HIN1-like protein 6 Neighboring gene B3 domain-containing protein Os08g0324300-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Cation-Chloride Cotransporter Gene Is Required for Cell Elongation and Osmoregulation in Rice. Chen ZC, et al. Plant Physiol, 2016 May. PMID 26983995, Free PMC Article
    2. Cloning and functional characterization of a cation-chloride cotransporter gene OsCCC1. Kong XQ, et al. Plant Mol Biol, 2011 Apr. PMID 21369877
    3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsCCC1 is involved in the cell elongation by regulating ion (Cl(-), K(+), and Na(+)) homeostasis to maintain cellular osmotic potential.
      Title: A Cation-Chloride Cotransporter Gene Is Required for Cell Elongation and Osmoregulation in Rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium:chloride symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell volume homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chloride ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chloride transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in potassium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in potassium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cation-chloride cotransporter 1
    Names
    LOC_Os08g23440
    OSJNBa0078D03.20
    Os08g0323800
    Potassium-chloride cotransporter 1
    putative Na+/K+/Cl-cotransport protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403526.1 → NP_001390455.1  cation-chloride cotransporter 1

      Status: VALIDATED

      Source sequence(s)
      AK060470, CB649599, CI180846, LC085614
      UniProtKB/Swiss-Prot
      Q0J6F8, Q6Z0E2
      UniProtKB/TrEMBL
      A0A173M0A1, A2YTX2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14253634..14262885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z0E2.1 GenPept UniProtKB/Swiss-Prot:Q6Z0E2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials