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    LOC4351908 serine carboxypeptidase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351908, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351908
    Gene description
    serine carboxypeptidase 1-like
    Locus tag
    OSNPB_120257000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CBP1
    Expression
    Broad expression in roots after flowering (RPKM 69.1), leaves after flowering (RPKM 65.2) and 4 other tissues See more
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    Genomic context

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    See LOC4351908 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (8887914..8893142, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (8829597..8834640, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277211 Neighboring gene pentatricopeptide repeat-containing protein At5g27110 Neighboring gene uncharacterized LOC107279727 Neighboring gene uncharacterized LOC112937480

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type carboxypeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in secondary metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carboxypeptidase C 1
    Names
    Carboxypeptidase C
    LOC_Os12g15470
    serine carboxypeptidase I
    NP_001410359.1
    XP_015618180.1
    XP_066162078.1
    XP_066162079.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423430.1 → NP_001410359.1  carboxypeptidase C 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AK062220, CB658058, CF326764, CI577499
      UniProtKB/Swiss-Prot
      A0A0P0Y8R8, P37890, Q2QUQ3
      UniProtKB/TrEMBL
      B9GCM2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      8887914..8893142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762694.3 → XP_015618180.1  carboxypeptidase C 1 isoform X2

      UniProtKB/TrEMBL
      B9GCM2
      Conserved Domains (1) summary
      pfam00450
      Location:47 → 508
      Peptidase_S10; Serine carboxypeptidase

    2. XM_066305982.1 → XP_066162079.1  carboxypeptidase C 1 isoform X3

    3. XM_066305981.1 → XP_066162078.1  carboxypeptidase C 1 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P37890.1 GenPept UniProtKB/Swiss-Prot:P37890

    Gene LinkOut

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