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    LOC4332187 deoxymugineic acid synthase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332187, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4332187
    Gene description
    deoxymugineic acid synthase 1-like
    Locus tag
    OSNPB_030237100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsDMAS1
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    Genomic context

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    See LOC4332187 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7277511..7279951)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7228844..7231523)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene anaphase-promoting complex subunit 6 Neighboring gene transmembrane 9 superfamily member 3 Neighboring gene protein indeterminate-domain 16 Neighboring gene uncharacterized LOC4332189

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and characterization of deoxymugineic acid synthase genes from graminaceous plants. Bashir K, et al. J Biol Chem, 2006 Oct 27. PMID 16926158
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aldose reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    deoxymugineic acid synthase 1-like
    Names
    Os03g0237100
    deoxymugineic acid synthase1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      7277511..7279951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775463.3 → XP_015630949.1  deoxymugineic acid synthase 1-like

      UniProtKB/Swiss-Prot
      Q0PCF5, Q10PE7, Q8H011
      UniProtKB/TrEMBL
      A3AFW4
      Conserved Domains (2) summary
      cd19124
      Location:15 → 291
      AKR_AKR4A_4B; AKR4A and AKR4B families of aldo-keto reductase (AKR)
      cl22429
      Location:279 → 315
      HHH_5; Helix-hairpin-helix domain
    Nucleotide Protein
    Heading Accession and Version

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