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    LOC9269322 O-fucosyltransferase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269322, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9269322
    Gene description
    O-fucosyltransferase 6
    Locus tag
    OSNPB_090548034
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 3.1), roots after flowering (RPKM 2.9) and 6 other tissues See more
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    Genomic context

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    See LOC9269322 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26110727..26118256)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (21667544..21674392)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene F-box/FBD/LRR-repeat protein At5g22660 Neighboring gene uncharacterized LOC107276304 Neighboring gene chitin elicitor-binding protein-like Neighboring gene protein DETOXIFICATION 45, chloroplastic Neighboring gene probable flavin-containing monooxygenase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    O-fucosyltransferase 6
    Names
    F-box and DUF domain-containing protein
    F-box/FBD/LRR-repeat protein At5g22660
    OSJNBa0038K02.34
    OSJNBa0038K02.35
    Os09g0548034
    Os09g0548066
    Os09g0548100
    putative auxin-independent growth promoter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26110727..26118256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304386.1 → XP_066160483.1  O-fucosyltransferase 6 isoform X2

      UniProtKB/TrEMBL
      B9G4W1

    2. XM_026020518.2 → XP_025876303.1  O-fucosyltransferase 6 isoform X3

      UniProtKB/TrEMBL
      B8BE46
      Conserved Domains (1) summary
      cd11299
      Location:131 → 451
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

    3. XM_015795910.3 → XP_015651396.1  O-fucosyltransferase 6 isoform X1

      UniProtKB/TrEMBL
      B8BE46
      Conserved Domains (1) summary
      cd11299
      Location:110 → 430
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version

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