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    LOC4325094 amino acid permease 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325094, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4325094
    Gene description
    amino acid permease 5
    Locus tag
    OSNPB_010878700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325094 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38763661..38767866, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38133432..38137790, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene receptor protein-tyrosine kinase CEPR2 Neighboring gene amino acid permease 8 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene extradiol ring-cleavage dioxygenase Neighboring gene extradiol ring-cleavage dioxygenase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    amino acid permease 3; amino acid permease 4; amino acid permease 5
    Names
    Os01g0878700
    P0018C10.17
    P0471B04.28
    putative amino acid carrier

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38763661..38767866 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765854.3 → XP_015621340.1  amino acid permease 5 isoform X2

      UniProtKB/TrEMBL
      A0A088MWT3, A0A0P0VB40, A2WXK1, Q0JH83, Q5N9H2
      Conserved Domains (1) summary
      pfam01490
      Location:20 → 452
      Aa_trans; Transmembrane amino acid transporter protein

    2. XM_015765846.3 → XP_015621332.1  amino acid permease 4 isoform X1

      UniProtKB/TrEMBL
      A2WXK1
      Conserved Domains (1) summary
      pfam01490
      Location:35 → 464
      Aa_trans; Transmembrane amino acid transporter protein

    3. XM_066306327.1 → XP_066162424.1  amino acid permease 3 isoform X3

      UniProtKB/TrEMBL
      A2WXK1
    Nucleotide Protein
    Heading Accession and Version

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