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    LOC4325581 protein IQ-DOMAIN 31 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325581, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4325581
    Gene description
    protein IQ-DOMAIN 31
    Locus tag
    OSNPB_010716200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4325581 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30397915..30403758, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29801079..29806965, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325579 Neighboring gene pentatricopeptide repeat-containing protein At1g08070, chloroplastic Neighboring gene uncharacterized LOC4325582 Neighboring gene uncharacterized LOC4325583

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein IQ-DOMAIN 31
    Names
    Os01g0716200
    P0683B11.9-1
    calmodulin-binding family protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30397915..30403758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794173.3 → XP_015649659.1  protein IQ-DOMAIN 31 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V7E2
      Conserved Domains (3) summary
      smart00015
      Location:99 → 117
      IQ; Calmodulin-binding motif
      COG5022
      Location:99 → 338
      COG5022; Myosin heavy chain [General function prediction only]
      pfam13178
      Location:498 → 563
      DUF4005; Protein of unknown function (DUF4005)

    2. XM_015794161.3 → XP_015649647.1  protein IQ-DOMAIN 31 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V7D9, A0A0P0V7E2, B8A8P5, B9EZ54, Q5JMB8
      Conserved Domains (3) summary
      smart00015
      Location:100 → 118
      IQ; Calmodulin-binding motif
      COG5022
      Location:100 → 339
      COG5022; Myosin heavy chain [General function prediction only]
      pfam13178
      Location:499 → 564
      DUF4005; Protein of unknown function (DUF4005)

    3. XM_066304936.1 → XP_066161033.1  protein IQ-DOMAIN 31 isoform X2

    4. XM_015794168.3 → XP_015649654.1  protein IQ-DOMAIN 31 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V7D9, A0A0P0V7E2, B8A8P5, B9EZ54, Q5JMB8
      Conserved Domains (3) summary
      smart00015
      Location:100 → 118
      IQ; Calmodulin-binding motif
      COG5022
      Location:100 → 339
      COG5022; Myosin heavy chain [General function prediction only]
      pfam13178
      Location:499 → 564
      DUF4005; Protein of unknown function (DUF4005)
    Nucleotide Protein
    Heading Accession and Version

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