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    LOC4331204 AT-hook motif nuclear-localized protein 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331204, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331204
    Gene description
    AT-hook motif nuclear-localized protein 9
    Locus tag
    OSNPB_020824300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1063_D06.10; OJ1136_C04.18
    Expression
    Broad expression in flower buds (RPKM 35.1), flowers (RPKM 33.2) and 6 other tissues See more
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    Genomic context

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    See LOC4331204 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35415308..35419479, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 714C3-like Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene uncharacterized LOC4331205 Neighboring gene remorin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables minor groove of adenine-thymine-rich DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-hook motif nuclear-localized protein 9
    Names
    Os02g0824300
    putative AT-hook protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      35415308..35419479 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772019.1 → XP_015627505.1  AT-hook motif nuclear-localized protein 9

      UniProtKB/TrEMBL
      A0A0P0VRF8, A2XB73, Q6K9W5, Q6KAA8
      Conserved Domains (1) summary
      cd11378
      Location:211 → 325
      DUF296; Domain of unknown function found in archaea, bacteria, and plants
    Nucleotide Protein
    Heading Accession and Version

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