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    LOC4324332 uncharacterized LOC4324332 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324332, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324332
    Gene description
    uncharacterized LOC4324332
    Locus tag
    OSNPB_010916300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 13.0), roots after flowering (RPKM 10.9) and 6 other tissues See more
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    Genomic context

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    See LOC4324332 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40573456..40579540, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39938802..39944890, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene glycine-rich cell wall structural protein 1.0 Neighboring gene AP-4 complex subunit epsilon Neighboring gene selenium-binding protein 1 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribonucleoprotein complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324332
    Names
    Os01g0916300
    P0004D12.32-1
    P0004D12.32-2
    P0413C03.6-1
    P0413C03.6-2
    putative poly-glutamine tract-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40573456..40579540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771908.3 → XP_015627394.1  uncharacterized protein LOC4324332

      UniProtKB/TrEMBL
      A0A0P0VC39, A0A979HL70, B9EVV2, Q5JLB8, Q5N817
      Conserved Domains (1) summary
      pfam00397
      Location:251 → 281
      WW; WW domain
    Nucleotide Protein
    Heading Accession and Version

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