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    LOC4346803 chlorophyll a-b binding protein 1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346803, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4346803
    Gene description
    chlorophyll a-b binding protein 1, chloroplastic-like
    Locus tag
    OSNPB_090346500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LHCP; CAB1R; P0512H04.4
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (15184284..15185619)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (10845683..10846965)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable disease resistance protein At5g43740 Neighboring gene probable NADH kinase Neighboring gene proton pump-interactor BIP103-like Neighboring gene uncharacterized LOC4346804 Neighboring gene protein unc-13 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The senescence-induced staygreen protein regulates chlorophyll degradation. Park SY, et al. Plant Cell, 2007 May. PMID 17513504, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plastoglobule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyll a-b binding protein 1, chloroplastic
    Names
    LHCII type I CAB-1
    LOC_Os09g17740
    OSJNBb0085I16.35
    putative chlorophyll a-b binding protein, chloroplast precursor (LHCII type I CAB) (LHCP)
    type I light-harvesting chlorophyll a/b-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403741.1 → NP_001390670.1  chlorophyll a-b binding protein 1, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AU082062, C98474, CB685819, CI686882
      UniProtKB/Swiss-Prot
      P12330, Q0J2G2, Q6EQF5
      UniProtKB/TrEMBL
      A0A1L2JKJ9, B8BEP6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      15184284..15185619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P12330.2 GenPept UniProtKB/Swiss-Prot:P12330

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