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    LOC4343420 protein disulfide isomerase-like 5-4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343420, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4343420
    Gene description
    protein disulfide isomerase-like 5-4
    Locus tag
    OSNPB_070524100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PDIL5-4; PDIL8-1; OsJ_24505; OsPDIL5-4; OsPDIL8-1
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    Genomic context

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    See LOC4343420 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (20568154..20574865)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (20341003..20347704)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939713 Neighboring gene vascular-related unknown protein 1 Neighboring gene uncharacterized LOC4343421 Neighboring gene uncharacterized LOC107277229

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein disulfide isomerase-like 5-4
    Names
    LOC_Os07g34030
    OSJNBb0052O11.108
    Protein disulfide isomerase-like 8-1
    thioredoxin family-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422177.1 → NP_001409106.1  protein disulfide isomerase-like 5-4

      Status: VALIDATED

      Source sequence(s)
      AK099660, CI135257, CI528305, CI570483, CI594915, CI742667
      UniProtKB/Swiss-Prot
      A0A0P0X7L3, Q69SA9
      UniProtKB/TrEMBL
      B8B6W5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      20568154..20574865
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792403.3 → XP_015647889.1  protein disulfide isomerase-like 5-4 isoform X1

      Conserved Domains (2) summary
      cd02961
      Location:55 → 169
      PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
      pfam07970
      Location:205 → 377
      COPIIcoated_ERV; Endoplasmic reticulum vesicle transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q69SA9.1 GenPept UniProtKB/Swiss-Prot:Q69SA9

    Gene LinkOut

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    Research Materials