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    LOC4326996 S-adenosylmethionine synthase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326996, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4326996
    Gene description
    S-adenosylmethionine synthase 2-like
    Locus tag
    OSNPB_010323600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SAM2; SAMS2
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    Genomic context

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    See LOC4326996 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (12405864..12408326, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (12363849..12366350, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pto-interacting protein 1 Neighboring gene CRS2-associated factor 2, chloroplastic Neighboring gene uncharacterized LOC136353603 Neighboring gene uncharacterized LOC9271854

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methionine adenosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in S-adenosylmethionine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S-adenosylmethionine synthase 2
    Names
    AdoMet synthase 2
    LOC_Os01g22010
    MAT 2
    Methionine adenosyltransferase 2
    OSJNBa0011P19.8
    S-adenosylmethonine synthase 2
    putative methionine adenosyltransferase
    NP_001393223.1
    NP_001393224.1
    NP_001393225.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406294.1 → NP_001393223.1  S-adenosylmethionine synthase 2

      Status: VALIDATED

      Source sequence(s)
      CB642703, CB650686, CB673356, CI056734
      UniProtKB/Swiss-Prot
      P93438, Q7F660
      UniProtKB/TrEMBL
      A0A0R7VIP9, Q1H9B9, Q1H9D0

    2. NM_001406295.1 → NP_001393224.1  S-adenosylmethionine synthase 2

      Status: VALIDATED

      Source sequence(s)
      AU163661, CB643463, CB659437, CB666192, CI597543
      UniProtKB/Swiss-Prot
      P93438, Q7F660
      UniProtKB/TrEMBL
      A0A0R7VIP9, Q1H9B9, Q1H9D0

    3. NM_001406296.1 → NP_001393225.1  S-adenosylmethionine synthase 2

      Status: VALIDATED

      Source sequence(s)
      AU031901, CB642703, CB658686, CB659169
      UniProtKB/Swiss-Prot
      P93438, Q7F660
      UniProtKB/TrEMBL
      A0A0R7VIP9, Q1H9B9, Q1H9D0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      12405864..12408326 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93438.1 GenPept UniProtKB/Swiss-Prot:P93438

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