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    LOC4330569 probable glycosyltransferase 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330569, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330569
    Gene description
    probable glycosyltransferase 7
    Locus tag
    OSNPB_020723200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GT7; OsGT7
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    Genomic context

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    See LOC4330569 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30543351..30545120)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30051499..30053312)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene enhancer of mRNA-decapping protein 4 Neighboring gene uncharacterized LOC107279931 Neighboring gene DNA-directed RNA polymerase II subunit 4 Neighboring gene auxin-responsive protein IAA8-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glycosyltransferase 7
    Names
    LOC_Os02g49140
    P0685G12.14
    putative alpha galactosyltransferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416849.1 → NP_001403778.1  probable glycosyltransferase 7

      Status: VALIDATED

      Source sequence(s)
      AK108140, AP014958, CB672404, CB672405, CI752830
      UniProtKB/Swiss-Prot
      A0A0P0VNV5, A2X933, Q6Z5M3
      UniProtKB/TrEMBL
      A3AAV5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30543351..30545120
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6Z5M3.1 GenPept UniProtKB/Swiss-Prot:Q6Z5M3

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