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    LOC4345440 BURP domain-containing protein 12-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345440, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4345440
    Gene description
    BURP domain-containing protein 12-like
    Locus tag
    OSNPB_080380100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    BURP12; OsBURP12
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    Genomic context

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    See LOC4345440 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (18039831..18042387)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (17904184..17906672)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene phosphoglucan phosphatase LSF1, chloroplastic Neighboring gene 2-methylene-furan-3-one reductase Neighboring gene uncharacterized LOC136351350 Neighboring gene uncharacterized LOC136351289 Neighboring gene alpha-amylase/trypsin inhibitor-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    BURP domain-containing protein 12
    Names
    LOC_Os08g29200
    P0709D11.28
    putative polygalacturonase isoenzyme 1 beta subunit homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422548.1 → NP_001409477.1  BURP domain-containing protein 12 precursor

      Status: VALIDATED

      Source sequence(s)
      AK101838
      UniProtKB/Swiss-Prot
      A0A0P0XFE7, Q6ZA27

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      18039831..18042387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6ZA27.1 GenPept UniProtKB/Swiss-Prot:Q6ZA27

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