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    LOC4342370 oxygen-evolving enhancer protein 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342370, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342370
    Gene description
    oxygen-evolving enhancer protein 2, chloroplastic
    Locus tag
    OSNPB_070141400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OS0EE2; OJ1351_C05.112
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    Genomic context

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    See LOC4342370 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (2148225..2149776, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2136866..2138393, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 Neighboring gene classical arabinogalactan protein 9 Neighboring gene U4/U6 small nuclear ribonucleoprotein Prp31 homolog Neighboring gene disease resistance protein PIK6-NP

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a cDNA clone encoding 23 kDa polypeptide of the oxygen-evolving complex of photosystem II in rice. Yoshiba Y, et al. Plant Cell Physiol, 1995 Dec. PMID 8589938
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extrinsic component of membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxygen-evolving enhancer protein 2, chloroplastic
    Names
    23 kDa polypeptide of photosystem II
    23kDa polypeptide of photosystem II
    Os07g0141400
    chloroplast 23 kDa polypeptide of photosystem II
    probable photosystem II oxygen-evolving complex protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      2148225..2149776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791242.3 → XP_015646728.1  oxygen-evolving enhancer protein 2, chloroplastic

      UniProtKB/TrEMBL
      A2YI21, A3BGG7, O65103, Q0D8P6, Q8GTK4, U5YRP7
      Conserved Domains (1) summary
      PLN00042
      Location:1 → 254
      PLN00042; photosystem II oxygen-evolving enhancer protein 2; Provisional
    Nucleotide Protein
    Heading Accession and Version

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