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    LOC4334496 probable CoA ligase CCL12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334496, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334496
    Gene description
    probable CoA ligase CCL12
    Locus tag
    OSNPB_030805500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334496 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (34604607..34609483, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33631922..33636889, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like Neighboring gene lipid phosphate phosphatase delta Neighboring gene protochlorophyllide-dependent translocon component 52, chloroplastic Neighboring gene protochlorophyllide-dependent translocon component 52, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable CoA ligase CCL12
    Names
    Os03g0805500
    probable acyl-activating enzyme 18, peroxisomal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      34604607..34609483 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772354.3 → XP_015627840.1  probable CoA ligase CCL12 isoform X2

      UniProtKB/TrEMBL
      A0A8J8Y7U1, B8ALS7, B9F6K3, Q0DMJ5, Q10BT3
      Conserved Domains (1) summary
      PLN03052
      Location:8 → 730
      PLN03052; acetate--CoA ligase; Provisional

    2. XM_015772353.3 → XP_015627839.1  probable CoA ligase CCL12 isoform X1

      Conserved Domains (3) summary
      PLN03052
      Location:8 → 760
      PLN03052; acetate--CoA ligase; Provisional
      pfam16177
      Location:128 → 183
      ACAS_N; Acetyl-coenzyme A synthetase N-terminus
      cl17068
      Location:211 → 760
      AFD_class_I; Adenylate forming domain, Class I superfamily

    3. XM_015772355.2 → XP_015627841.1  probable CoA ligase CCL12 isoform X3

      UniProtKB/TrEMBL
      Q0DMJ5, Q75HI7
      Conserved Domains (2) summary
      PLN03051
      Location:103 → 589
      PLN03051; acyl-activating enzyme; Provisional
      cl17068
      Location:70 → 589
      AFD_class_I; Adenylate forming domain, Class I superfamily
    Nucleotide Protein
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