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    LOC4326444 protein NRT1/ PTR FAMILY 6.1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326444, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4326444
    Gene description
    protein NRT1/ PTR FAMILY 6.1
    Locus tag
    OSNPB_010103100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0436E04.6
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    Genomic context

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    See LOC4326444 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (183013..184955)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (178099..180674)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936174 Neighboring gene light-regulated protein, chloroplastic-like Neighboring gene uncharacterized LOC107279520 Neighboring gene vacuolar protein sorting-associated protein 60.1 Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene transfer RNA serine (anticodon AGA)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in oligopeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein NRT1/ PTR FAMILY 6.1
    Names
    Os01g0103100
    P0455C04.25
    putative peptide transport protein
    putative peptide transporter-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      183013..184955
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772731.3 → XP_015628217.1  protein NRT1/ PTR FAMILY 6.1

      UniProtKB/TrEMBL
      A0A0P0UWU9, A0A0P0UX70, A2WJN2, Q9FTZ3
      Conserved Domains (1) summary
      cl28910
      Location:65 → 592
      MFS; Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version

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