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    LOC4324442 isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324442, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324442
    Gene description
    isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial
    Locus tag
    OSNPB_010276100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsIDHa
    Expression
    Ubiquitous expression in flowers (RPKM 101.2), leaves after flowering (RPKM 69.7) and 6 other tissues See more
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    Genomic context

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    See LOC4324442 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9678423..9683169)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9665366..9670197)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L30-like Neighboring gene small nucleolar RNA Z103 Neighboring gene small nucleolar RNA Z103 Neighboring gene mitochondrial import receptor subunit TOM40-1 Neighboring gene late embryogenesis abundant protein ECP63

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase. Abiko T, et al. Plant Cell Physiol, 2005 Oct. PMID 16120687
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables isocitrate dehydrogenase (NAD+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isocitrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tricarboxylic acid cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial
    Names
    NAD-dependent isocitrate dehydrogenase a
    Os01g0276100
    P0038F12.18
    putative isocitrate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9678423..9683169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015755683.3 → XP_015611169.1  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial

      UniProtKB/TrEMBL
      A0A0P0V1C7, A0A8J8Y8S3, A2WNE7, Q0JNN9, Q9SDG5
      Conserved Domains (1) summary
      PLN00118
      Location:1 → 362
      PLN00118; isocitrate dehydrogenase (NAD+)
    Nucleotide Protein
    Heading Accession and Version

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