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    LOC4346042 oxysterol-binding protein-related protein 4B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346042, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346042
    Gene description
    oxysterol-binding protein-related protein 4B
    Locus tag
    OSNPB_080517700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4346042 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25841249..25845835)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25694401..25699625)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346040 Neighboring gene uncharacterized LOC4346041 Neighboring gene pathogenesis-related thaumatin-like protein 3.5 Neighboring gene small ribosomal subunit protein bS16m/bS16c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oxysterol-binding protein-related protein 4B
    Names
    Os08g0517700
    P0700D12.114-1
    P0700D12.114-2
    oxysterol-binding protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25841249..25845835
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792873.3 → XP_015648359.1  oxysterol-binding protein-related protein 4B isoform X1

      UniProtKB/TrEMBL
      A2YX30, A3BUV4, Q84Z91
      Conserved Domains (1) summary
      pfam01237
      Location:43 → 374
      Oxysterol_BP; Oxysterol-binding protein

    2. XM_015792874.3 → XP_015648360.1  oxysterol-binding protein-related protein 4B isoform X2

      UniProtKB/TrEMBL
      A0A0P0XHN1, Q7EZA3
      Conserved Domains (1) summary
      pfam01237
      Location:40 → 371
      Oxysterol_BP; Oxysterol-binding protein
    Nucleotide Protein
    Heading Accession and Version

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