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    LOC4330704 photosynthetic NDH subunit of subcomplex B 4, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330704, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330704
    Gene description
    photosynthetic NDH subunit of subcomplex B 4, chloroplastic
    Locus tag
    OSNPB_020744000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1734_E02.25
    Expression
    Biased expression in leaves before flowering (RPKM 137.9), roots after flowering (RPKM 37.2) and 3 other tissues See more
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    Genomic context

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    See LOC4330704 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31697367..31698853)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31202204..31203690)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein BOBBER 2 Neighboring gene casparian strip membrane protein 4 Neighboring gene uncharacterized LOC4330705 Neighboring gene expansin-A5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthetic electron transport in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NAD(P)H dehydrogenase complex (plastoquinone) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosynthetic NDH subunit of subcomplex B 4, chloroplastic
    Names
    Os02g0744000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001425661.1 → NP_001412590.1  photosynthetic NDH subunit of subcomplex B 4, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK064898, CF301710
      UniProtKB/TrEMBL
      A0A0P0VPQ1, B8AIF7, Q0DXM5, Q6Z2U3

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      31697367..31698853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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