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    LOC4325509 protein MALE DISCOVERER 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325509, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4325509
    Gene description
    protein MALE DISCOVERER 2
    Locus tag
    OSNPB_010674800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1117_G01.5; OJ1117_G01.6
    Expression
    Broad expression in flowers (RPKM 26.8), flower buds (RPKM 24.7) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (28319842..28327089)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (27733124..27739844)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene tubby-like F-box protein 1 Neighboring gene pentatricopeptide repeat-containing protein At1g30610, chloroplastic Neighboring gene rop guanine nucleotide exchange factor 9 Neighboring gene peroxiredoxin-2C-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein MALE DISCOVERER 2
    Names
    Os01g0674800
    P0485G01.39
    P0485G01.40
    probable LRR receptor-like serine/threonine-protein kinase MRH1
    serine/threonine-specific protein kinase NPK15-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      28319842..28327089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066306930.1 → XP_066163027.1  protein MALE DISCOVERER 2

      UniProtKB/TrEMBL
      B8A7A1, B9EYK4

    2. XM_066306931.1 → XP_066163028.1  protein MALE DISCOVERER 2

      UniProtKB/TrEMBL
      B8A7A1, B9EYK4

    3. XM_015760367.3 → XP_015615853.2  protein MALE DISCOVERER 2

      UniProtKB/TrEMBL
      B8A7A1, B9EYK4
    Nucleotide Protein
    Heading Accession and Version

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