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    LOC4346081 mediator of RNA polymerase II transcription subunit 15a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346081, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346081
    Gene description
    mediator of RNA polymerase II transcription subunit 15a
    Locus tag
    OSNPB_080523600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1186_G01.23; OJ1186_G01.24; OJ1081_B12.137; OJ1081_B12.138
    Expression
    Broad expression in roots before flowering (RPKM 22.2), leaves after flowering (RPKM 12.9) and 5 other tissues See more
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    Genomic context

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    See LOC4346081 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (26171309..26175472)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (26024711..26028950)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene BTB/POZ and MATH domain-containing protein 2 Neighboring gene uncharacterized LOC136351360

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mediator of RNA polymerase II transcription subunit 15a
    Names
    Os08g0523600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      26171309..26175472
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795063.3 → XP_015650549.1  mediator of RNA polymerase II transcription subunit 15a

      Conserved Domains (1) summary
      pfam16987
      Location:74 → 149
      KIX_2; KIX domain
    Nucleotide Protein
    Heading Accession and Version

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