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    LOC4343342 mitotic checkpoint serine/threonine-protein kinase BUB1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343342, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343342
    Gene description
    mitotic checkpoint serine/threonine-protein kinase BUB1
    Locus tag
    OSNPB_070508500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1163_G04.108
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    Genomic context

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    See LOC4343342 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19552192..19558295)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19325756..19331908)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein FLX-like 1 Neighboring gene SH3 domain-containing protein 3 Neighboring gene dof zinc finger protein MNB1A Neighboring gene probable potassium transporter 14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in meiotic sister chromatid cohesion, centromeric IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic spindle assembly checkpoint signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitotic checkpoint serine/threonine-protein kinase BUB1
    Names
    Os07g0508500
    serine/threonine-protein kinase bub1,checkpoint-associated-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19552192..19558295
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789784.2 → XP_015645270.1  mitotic checkpoint serine/threonine-protein kinase BUB1

      UniProtKB/TrEMBL
      A0A0P0X6P5, A0A8J8YQW3, B8B6H5, B9FXF7, I6UFZ9
      Conserved Domains (2) summary
      cl07066
      Location:76 → 152
      Mad3_BUB1_I; Mad3/BUB1 homology region 1
      cl21453
      Location:256 → 547
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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