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    LOC4342382 uncharacterized oxidoreductase At1g06690, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342382, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342382
    Gene description
    uncharacterized oxidoreductase At1g06690, chloroplastic
    Locus tag
    OSNPB_070143000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1343_B12.101; OJ1351_C05.129
    Expression
    Biased expression in leaves before flowering (RPKM 86.4), roots after flowering (RPKM 65.5) and 3 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (2208875..2212682)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (2197555..2201439)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281563 Neighboring gene uncharacterized oxidoreductase At1g06690, chloroplastic Neighboring gene transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aldo-keto reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized oxidoreductase At1g06690, chloroplastic
    Names
    Os07g0143000
    aldo/keto reductase family-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      2208875..2212682
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791972.3 → XP_015647458.1  uncharacterized oxidoreductase At1g06690, chloroplastic

      UniProtKB/TrEMBL
      A0A0N7KMX4, Q0D8N4, Q8GSK5
      Conserved Domains (1) summary
      cd19093
      Location:60 → 360
      AKR_AtPLR-like; Arabidopsis thaliana pyridoxal reductase (PLR) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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