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    LOC4343305 ubiquitin-like domain-containing protein CIP73 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343305, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4343305
    Gene description
    ubiquitin-like domain-containing protein CIP73
    Locus tag
    OSNPB_070498800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1197_D06.121-1; OJ1197_D06.121-2
    Expression
    Ubiquitous expression in mature seeds (RPKM 16.3), flowers (RPKM 14.5) and 6 other tissues See more
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    Genomic context

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    See LOC4343305 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18942682..18951224, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18717112..18725692, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343303 Neighboring gene LRR receptor-like serine/threonine-protein kinase GSO1 Neighboring gene protein trichome birefringence-like 13 Neighboring gene uncharacterized LOC107281625

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A novel interaction between calreticulin and ubiquitin-like nuclear protein in rice. Sharma A, et al. Plant Cell Physiol, 2004 Jun. PMID 15215503
    2. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables misfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of BAT3 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like domain-containing protein CIP73
    Names
    Os07g0498800
    large proline-rich protein BAG6
    putative calreticulin interacted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18942682..18951224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791600.3 → XP_015647086.1  ubiquitin-like domain-containing protein CIP73 isoform X2

      UniProtKB/TrEMBL
      Q0D698, Q84UT7
      Conserved Domains (1) summary
      pfam00240
      Location:26 → 95
      ubiquitin; Ubiquitin family

    2. XM_015791599.3 → XP_015647085.1  ubiquitin-like domain-containing protein CIP73 isoform X1

      UniProtKB/TrEMBL
      B8B6E2, B9FXD6, Q69VS3
      Conserved Domains (1) summary
      pfam00240
      Location:26 → 95
      ubiquitin; Ubiquitin family

    3. XM_066312195.1 → XP_066168292.1  ubiquitin-like domain-containing protein CIP73 isoform X1

      UniProtKB/TrEMBL
      B8B6E2, B9FXD6, Q69VS3
    Nucleotide Protein
    Heading Accession and Version

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