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    LOC4349283 arsenate reductase 2.1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349283, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4349283
    Gene description
    arsenate reductase 2.1-like
    Locus tag
    OSNPB_100545700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    STR20; ACR2.1; CDC25.1; OsStr20; OsACR2.1; OsJ_32347
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    Genomic context

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    See LOC4349283 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22020011..22022983)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (21327679..21330591)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene xyloglucan endotransglucosylase/hydrolase protein 31 Neighboring gene uncharacterized LOC4349282 Neighboring gene U1 spliceosomal RNA Neighboring gene cytochrome c-type biogenesis protein CcmE homolog, mitochondrial Neighboring gene pistil-specific extensin-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A CDC25 homologue from rice functions as an arsenate reductase. Duan GL, et al. New Phytol, 2007. PMID 17388894
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arsenate reductase 2.1
    Names
    Dual specificity phosphatase CDC25.1
    LOC_Os10g39860
    OSJNBa0001O14.6
    Sulfurtransferase 20
    dual-specificity tyrosine-phosphatase CDC25
    NP_001391241.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001404312.1 → NP_001391241.1  arsenate reductase 2.1

      Status: VALIDATED

      Source sequence(s)
      AK073024, CF333259, CF335635
      UniProtKB/Swiss-Prot
      A0A0P0XWU2, Q336V5, Q9AV34

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22020011..22022983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q336V5.1 GenPept UniProtKB/Swiss-Prot:Q336V5

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