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    LOC4336092 probable RNA-dependent RNA polymerase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336092, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336092
    Gene description
    probable RNA-dependent RNA polymerase 2
    Locus tag
    OSNPB_040465700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RDR2; OsRDR2
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    Genomic context

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    See LOC4336092 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (23779215..23785062)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23284691..23290457)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene xyloglucan O-acetyltransferase 4 Neighboring gene GCN5-related N-acetyltransferase 5, chloroplastic Neighboring gene MLP-like protein 423 Neighboring gene uncharacterized LOC4336093 Neighboring gene probable receptor-like protein kinase At2g42960

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA-dependent RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in siRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear RNA-directed RNA polymerase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable RNA-dependent RNA polymerase 2
    Names
    LOC_Os04g39160
    OSJNBb0048E02.13
    RNA-directed RNA polymerase 2
    NP_001406348.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419419.1 → NP_001406348.1  probable RNA-dependent RNA polymerase 2

      Status: VALIDATED

      Source sequence(s)
      AP014960, CF324556, CI090277, CI122763, CI226286, CI310885
      UniProtKB/Swiss-Prot
      Q0JCJ6, Q7XM31

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      23779215..23785062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XM31.1 GenPept UniProtKB/Swiss-Prot:Q7XM31

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