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    LOC4329597 protein FAR1-RELATED SEQUENCE 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329597, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329597
    Gene description
    protein FAR1-RELATED SEQUENCE 5
    Locus tag
    OSNPB_020542200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.2), leaves after flowering (RPKM 6.4) and 6 other tissues See more
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    Genomic context

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    See LOC4329597 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (20614015..20619169, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20135574..20140743, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene cytochrome b-c1 complex subunit 6 Neighboring gene GPI-anchored protein LLG1 Neighboring gene uncharacterized LOC4329598 Neighboring gene uncharacterized LOC4329599

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR-RED IMPAIRED RESPONSE 1; protein FAR1-RELATED SEQUENCE 5
    Names
    Os02g0542200
    P0472F10.13-1
    protein FAR1-RELATED SEQUENCE 7
    putative far-red impaired response protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      20614015..20619169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771825.3 → XP_015627311.1  protein FAR1-RELATED SEQUENCE 5 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VK20, A0A0P0VK64, Q6ESZ2
      Conserved Domains (1) summary
      PLN03097
      Location:50 → 815
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

    2. XM_015771824.3 → XP_015627310.1  protein FAR1-RELATED SEQUENCE 5 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VK64
      Conserved Domains (4) summary
      smart00575
      Location:561 → 581
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:50 → 784
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:65 → 153
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:280 → 362
      MULE; MULE transposase domain

    3. XM_066307762.1 → XP_066163859.1  protein FAR-RED IMPAIRED RESPONSE 1 isoform X4

    4. XM_066307763.1 → XP_066163860.1  protein FAR-RED IMPAIRED RESPONSE 1 isoform X4

    5. XM_066307760.1 → XP_066163857.1  protein FAR-RED IMPAIRED RESPONSE 1 isoform X4

    6. XM_066307761.1 → XP_066163858.1  protein FAR-RED IMPAIRED RESPONSE 1 isoform X4

    7. XM_015771826.3 → XP_015627312.1  protein FAR-RED IMPAIRED RESPONSE 1 isoform X3

      Conserved Domains (3) summary
      smart00575
      Location:303 → 323
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:4 → 526
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam10551
      Location:22 → 104
      MULE; MULE transposase domain

    8. XM_015771832.3 → XP_015627318.1  protein FAR-RED IMPAIRED RESPONSE 1 isoform X3

      Conserved Domains (3) summary
      smart00575
      Location:303 → 323
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:4 → 526
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam10551
      Location:22 → 104
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version

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