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    LOC4349409 large ribosomal subunit protein eL27x [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349409, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4349409
    Gene description
    large ribosomal subunit protein eL27x
    Locus tag
    OSNPB_100564300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4349409 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (22980823..22981508, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (22288662..22289398, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 31 Neighboring gene trihelix transcription factor ENAP1 Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic Neighboring gene serine/threonine-protein kinase SAPK3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL27x
    Names
    60S ribosomal protein L27-3
    Os10g0564300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      22980823..22981508 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757323.3 → XP_015612809.1  large ribosomal subunit protein eL27x

      UniProtKB/TrEMBL
      A0A5S6RAV3, A2ZAB3, A3C7D8, Q7XC31, Q9AY43
      Conserved Domains (2) summary
      cd06090
      Location:6 → 88
      KOW_RPL27; KOW motif of eukaryotic Ribosomal Protein L27
      pfam01777
      Location:52 → 136
      Ribosomal_L27e; Ribosomal L27e protein family
    Nucleotide Protein
    Heading Accession and Version

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