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    LOC4346294 28 kDa ribonucleoprotein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346294, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4346294
    Gene description
    28 kDa ribonucleoprotein, chloroplastic
    Locus tag
    OSNPB_080557100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1150_A11.19-1; OJ1150_A11.19-2
    Expression
    Broad expression in leaves before flowering (RPKM 225.0), flower buds (RPKM 99.9) and 5 other tissues See more
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    Genomic context

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    See LOC4346294 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27880266..27882189, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene KDEL-tailed cysteine endopeptidase CEP1 Neighboring gene protein-L-isoaspartate O-methyltransferase 1 Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like Neighboring gene uncharacterized LOC4346296

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    28 kDa ribonucleoprotein, chloroplastic
    Names
    Os08g0557100
    nucleic acid-binding protein-like
    putative nucleic acid-binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27880266..27882189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794960.2 → XP_015650446.1  28 kDa ribonucleoprotein, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0XK50, A0A8J8XUS7, A2YY14, A3BVP4, Q6ZJ16
      Conserved Domains (2) summary
      TIGR01628
      Location:129 → 303
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cd21608
      Location:224 → 297
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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