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    LOC4325034 extensin-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325034, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325034
    Gene description
    extensin-1
    Locus tag
    OSNPB_010899700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0035F12.2
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    Genomic context

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    See LOC4325034 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39769917..39772324, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39136915..39139447, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable methyltransferase PMT19 Neighboring gene uncharacterized protein At3g49140 Neighboring gene uncharacterized LOC136354966 Neighboring gene AP2-like ethylene-responsive transcription factor PLT1 Neighboring gene uncharacterized LOC4325036

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cell periphery IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extensin-1
    Names
    Os01g0899700
    putative extensin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39769917..39772324 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774813.3 → XP_015630299.1  extensin-1

      UniProtKB/TrEMBL
      A0A0P0VBN5, A2WXZ6, A3A0K6, Q5N8V9
      Conserved Domains (2) summary
      PRK10263
      Location:205 → 387
      PRK10263; DNA translocase FtsK; Provisional
      pfam01190
      Location:51 → 137
      Pollen_Ole_e_I; Pollen proteins Ole e I like
    Nucleotide Protein
    Heading Accession and Version

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