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    LOC4336875 ubiquinol oxidase 1b, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336875, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336875
    Gene description
    ubiquinol oxidase 1b, mitochondrial-like
    Locus tag
    OSNPB_040600300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AOX1b
    Expression
    Biased expression in roots before flowering (RPKM 56.2), leaves after flowering (RPKM 11.5) and 1 other tissue See more
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    Genomic context

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    See LOC4336875 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30797684..30799265, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30291461..30293053, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene myb family transcription factor PHL11 Neighboring gene uncharacterized LOC4336873 Neighboring gene ubiquinol oxidase 1a, mitochondrial-like Neighboring gene uncharacterized LOC4336876 Neighboring gene putative protein Brevis radix-like 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Transcript levels of tandem-arranged alternative oxidase genes in rice are increased by low temperature. Ito Y, et al. Gene, 1997 Dec 12. PMID 9426242
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alternative oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in alternative respiration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquinol oxidase 1b, mitochondrial-like
    Names
    Os04g0600300
    alternative oxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30797684..30799265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778145.3 → XP_015633631.1  ubiquinol oxidase 1b, mitochondrial-like

      UniProtKB/Swiss-Prot
      O82766, Q7XPT1
      UniProtKB/TrEMBL
      A2XX55, Q01HU3
      Conserved Domains (1) summary
      PLN02478
      Location:1 → 335
      PLN02478; alternative oxidase
    Nucleotide Protein
    Heading Accession and Version

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