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    LOC4331747 serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331747, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331747
    Gene description
    serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like
    Locus tag
    OSNPB_030167700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 48.9), mature seeds (RPKM 48.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3667842..3672425, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3657126..3661855, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene receptor homology region, transmembrane domain- and RING domain-containing protein 1-like Neighboring gene fatty acyl-CoA reductase 2 Neighboring gene F-box/kelch-repeat protein At1g55270 Neighboring gene uncharacterized LOC4331750 Neighboring gene late embryogenesis abundant protein, group 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like
    Names
    Os03g0167700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      3667842..3672425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776820.3 → XP_015632306.1  serine/threonine-protein phosphatase PP2A-4 catalytic subunit-like

      UniProtKB/Swiss-Prot
      P0C5D7, Q0IXS3, Q338E3, Q9SBW3
      UniProtKB/TrEMBL
      Q0DUU0, Q10R90
      Conserved Domains (1) summary
      cd07415
      Location:15 → 298
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

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