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    LOC4348062 disease resistance protein RPM1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348062, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4348062
    Gene description
    disease resistance protein RPM1
    Locus tag
    OSNPB_100136100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4348062 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (2234474..2245717, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (2226196..2237606, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene caffeoylshikimate esterase Neighboring gene uncharacterized LOC107278360 Neighboring gene small nucleolar RNA Z247 Neighboring gene disease resistance protein RGA2 Neighboring gene uncharacterized LOC136353696 Neighboring gene uncharacterized LOC4348063

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RPM1
    Names
    Os10g0136100
    putative NB-ARC domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      2234474..2245717 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015759417.3 → XP_015614903.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      A0A0P0XRH1, Q0IZ28, Q10A58, Q7XH20, Q9AYH9
      Conserved Domains (3) summary
      COG4886
      Location:572 → 695
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      pfam00931
      Location:201 → 424
      NB-ARC; NB-ARC domain
      pfam18052
      Location:5 → 104
      Rx_N; Rx N-terminal domain

    2. XM_015759416.3 → XP_015614902.1  disease resistance protein RPM1

      UniProtKB/TrEMBL
      A0A0P0XRH1, Q0IZ28, Q10A58, Q7XH20, Q9AYH9
      Conserved Domains (3) summary
      COG4886
      Location:572 → 695
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      pfam00931
      Location:201 → 424
      NB-ARC; NB-ARC domain
      pfam18052
      Location:5 → 104
      Rx_N; Rx N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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