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    LOC4330795 transport inhibitor response 1-like protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330795, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4330795
    Gene description
    transport inhibitor response 1-like protein
    Locus tag
    OSNPB_020759700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1175_B01.8-1; OJ1175_B01.8-2
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    Genomic context

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    See LOC4330795 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32481398..32484734)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31985871..31989421)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355100 Neighboring gene pentatricopeptide repeat-containing protein At1g73400, mitochondrial Neighboring gene SNW/SKI-interacting protein A-like Neighboring gene protein CURVATURE THYLAKOID 1D, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transport inhibitor response 1-like protein
    Names
    F-box containing protein TIR1-like
    Os02g0759700
    putative F-box containing protein TIR1
    putative coronatine-insensitive protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32481398..32484734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770760.3 → XP_015626246.1  transport inhibitor response 1-like protein

      UniProtKB/TrEMBL
      A0A0N7KG48, B9F334, Q6K8E2
      Conserved Domains (4) summary
      cd09293
      Location:418 → 544
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:385 → 409
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam18511
      Location:94 → 135
      F-box_5
      pfam18791
      Location:155 → 200
      Transp_inhibit; Transport inhibitor response 1 protein domain
    Nucleotide Protein
    Heading Accession and Version

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