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    LOC4345271 ribonuclease E/G-like protein, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345271, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345271
    Gene description
    ribonuclease E/G-like protein, chloroplastic
    Locus tag
    OSNPB_080323600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 33.8), roots after flowering (RPKM 13.3) and 6 other tissues See more
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    Genomic context

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    See LOC4345271 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (14235233..14246301, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (14167673..14178909, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4345270 Neighboring gene uncharacterized LOC107282024 Neighboring gene cation-chloride cotransporter 1-like Neighboring gene NDR1/HIN1-like protein 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribonuclease E/G-like protein, chloroplastic
    Names
    OSJNBa0078D03.16-1
    OSJNBa0078D03.16-2
    Os08g0323600
    putative endoribonuclease E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      14235233..14246301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795337.3 → XP_015650823.1  ribonuclease E/G-like protein, chloroplastic isoform X1

      UniProtKB/TrEMBL
      B8B9Q9, B9G0B1, Q0J6F9, Q6Z0E3
      Conserved Domains (4) summary
      PLN02950
      Location:115 → 272
      PLN02950; 4-alpha-glucanotransferase
      pfam10150
      Location:658 → 935
      RNase_E_G; Ribonuclease E/G family
      cl09927
      Location:444 → 488
      S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
      cl15347
      Location:102 → 189
      CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...

    2. XM_015795338.3 → XP_015650824.1  ribonuclease E/G-like protein, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B8B9Q9
      Conserved Domains (4) summary
      TIGR00757
      Location:402 → 947
      RNaseEG; ribonuclease, Rne/Rng family
      pfam10150
      Location:635 → 912
      RNase_E_G; Ribonuclease E/G family
      cl09927
      Location:421 → 465
      S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
      cl15347
      Location:95 → 166
      CBM20; The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is ...
    Nucleotide Protein
    Heading Accession and Version

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