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    LOC4352705 renalase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4352705, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4352705
    Gene description
    renalase
    Locus tag
    OSNPB_120597400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 9.0), roots after flowering (RPKM 3.6) and 6 other tissues See more
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    Genomic context

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    See LOC4352705 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (25082541..25086030, complement)

    Chromosome 12 - NC_029267.1Genomic Context describing neighboring genes Neighboring gene TNF receptor-associated factor homolog 1a Neighboring gene uncharacterized LOC4352704 Neighboring gene probable ureidoglycolate hydrolase Neighboring gene flowering locus K homology domain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029267.1 Chromosome 12 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    renalase; uncharacterized protein LOC4352705
    Names
    Os12g0597400
    XP_015620210.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423611.1 → NP_001410540.1  renalase

      Status: VALIDATED

      Source sequence(s)
      AK099006, CI644898
      UniProtKB/TrEMBL
      A2ZMD1, Q0IM52, Q2QMN9

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029267.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25082541..25086030 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764724.2 → XP_015620210.1  uncharacterized protein LOC4352705

      UniProtKB/TrEMBL
      Q2QMN9
      Conserved Domains (1) summary
      COG3380
      Location:89 → 448
      COG3380; Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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