U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4344542 protein STICHEL-like 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344542, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4344542
    Gene description
    protein STICHEL-like 2
    Locus tag
    OSNPB_080120200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1203H11.6; OJ1005_B05.35
    Expression
    Broad expression in flower buds (RPKM 11.5), flowers (RPKM 11.2) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1121735..1127014)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1110455..1115785)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene photosystem II core complex proteins psbY, chloroplastic Neighboring gene succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like Neighboring gene uncharacterized LOC136351349 Neighboring gene MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA polymerase III complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of DNA replication factor C complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein STICHEL-like 2
    Names
    Os08g0120200
    putative DNA polymerase III like protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1121735..1127014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066303343.1 → XP_066159440.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5

    2. XM_026027503.2 → XP_025883288.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5
      Conserved Domains (1) summary
      COG2812
      Location:147 → 497
      DnaX; DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]

    3. XM_066303344.1 → XP_066159441.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5

    4. XM_015794214.3 → XP_015649700.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5
      Conserved Domains (1) summary
      COG2812
      Location:147 → 497
      DnaX; DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]

    5. XM_066303345.1 → XP_066159442.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5

    6. XM_066303347.1 → XP_066159444.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5

    7. XM_066303346.1 → XP_066159443.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5

    8. XM_066303348.1 → XP_066159445.1  protein STICHEL-like 2

      UniProtKB/TrEMBL
      B8BAD4, Q0J8C4, Q6YPF5
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials