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    LOC4333978 GTP-binding protein At3g49725, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333978, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333978
    Gene description
    GTP-binding protein At3g49725, chloroplastic
    Locus tag
    OSNPB_030727900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4333978 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (30586205..30603150, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (29705014..29722064, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase 1-like Neighboring gene uncharacterized LOC4333977 Neighboring gene uncharacterized LOC4333979 Neighboring gene pentatricopeptide repeat-containing protein At3g49730

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ribosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GTP-binding protein At3g49725, chloroplastic
    Names
    Os03g0727900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      30586205..30603150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777220.3 → XP_015632706.1  GTP-binding protein At3g49725, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0W335, Q0DNY0
      Conserved Domains (1) summary
      TIGR03156
      Location:75 → 434
      GTP_HflX; GTP-binding protein HflX

    2. XM_015777221.3 → XP_015632707.1  GTP-binding protein At3g49725, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0W335, Q0DNY0
      Conserved Domains (1) summary
      TIGR03156
      Location:75 → 434
      GTP_HflX; GTP-binding protein HflX
    Nucleotide Protein
    Heading Accession and Version

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