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    LOC4332523 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332523, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4332523
    Gene description
    6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
    Locus tag
    OSNPB_030294200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 12.6), roots before flowering (RPKM 11.4) and 6 other tissues See more
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    Genomic context

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    See LOC4332523 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (10309353..10321273)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (10258533..10270790)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355715 Neighboring gene uncharacterized LOC107277633 Neighboring gene INCREASED PETAL GROWTH ANISOTROPY 1-like protein 1 Neighboring gene trihelix transcription factor ENAP2-like Neighboring gene trihelix transcription factor ENAP2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 6-phosphofructo-2-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fructose-2,6-bisphosphate 2-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables starch binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fructose 2,6-bisphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fructose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
    Names
    Os03g0294200

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      10309353..10321273
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774918.3 → XP_015630404.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X1

      Conserved Domains (4) summary
      smart01065
      Location:17 → 103
      CBM_2; Starch binding domain
      pfam00300
      Location:527 → 702
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
      pfam01591
      Location:306 → 524
      6PF2K; 6-phosphofructo-2-kinase
      pfam13671
      Location:319 → 475
      AAA_33; AAA domain

    2. XM_015774919.3 → XP_015630405.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2

      Conserved Domains (4) summary
      smart01065
      Location:17 → 103
      CBM_2; Starch binding domain
      pfam00300
      Location:526 → 701
      His_Phos_1; Histidine phosphatase superfamily (branch 1)
      pfam01591
      Location:305 → 523
      6PF2K; 6-phosphofructo-2-kinase
      pfam13671
      Location:318 → 474
      AAA_33; AAA domain

    3. XM_066308557.1 → XP_066164654.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X3

      UniProtKB/TrEMBL
      Q10MV4

    4. XM_015774920.3 → XP_015630406.1  6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X4

      UniProtKB/TrEMBL
      Q0DSQ9, Q10MV4, Q10MV5
      Conserved Domains (3) summary
      smart01065
      Location:17 → 103
      CBM_2; Starch binding domain
      pfam01591
      Location:240 → 451
      6PF2K; 6-phosphofructo-2-kinase
      pfam00300
      Location:454 → 629
      His_Phos_1; Histidine phosphatase superfamily (branch 1)

    RNA

    1. XR_001544499.3 RNA Sequence

    2. XR_010740020.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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